{ "_id": "6ac9fcbafe5cc25786e83b7c", "Package": "SurrogateParadoxTest", "Type": "Package", "Title": "Empirical Testing of Surrogate Paradox Assumptions", "Version": "2.2", "Date": "2026-04-11", "Authors@R": "c(person(given = \"Emily\", family = \"Hsiao\", role = c(\"aut\")), person(\"Layla\", \"Parast\", email = \"parast@austin.utexas.edu\", role = c(\"aut\", \"cre\")))", "Description": "Provides functions to nonparametrically assess assumptions\nsufficient to prevent the surrogate paradox through hypothesis\ntests of stochastic dominance, monotonicity of conditional mean\nfunctions, and non-negative residual treatment effect. Details\nare described in: Hsiao E, Tian L, and Parast L (2026).\n\"Avoiding the surrogate paradox: an empirical framework for\nassessing assumptions.\" Journal of Nonparametric Statistics\n. There are also functions\nto assess resilience to the surrogate paradox via calculation\nof the resilience probability, the resilience bound, and the\nresilience set. Details will be available in Hsiao E, Tian L,\nand Parast L, \"Resilience Measures for the Surrogate Paradox\"\n(Under Review). Lastly, there is a function to assess\nresilience to the surrogate paradox in the met-analytic\nsetting, described in Hsiao E and Parast L, \"A Functional-Class\nMeta-Analytic Framework for Quantifying Surrogate Resilience\"\n(Under Review). A tutorial for this package can be found at\n.", "License": "GPL", "NeedsCompilation": "yes", "Packaged": { "Date": "2026-10-10 08:26:02 UTC", "User": "root" }, "Author": "Emily Hsiao [aut], Layla Parast [aut, cre]", "Maintainer": "Layla Parast ", "Repository": "https://laylaparast.r-universe.dev", "Date/Publication": "2026-04-12 17:00:27 UTC", "RemoteUrl": "https://github.com/cran/SurrogateParadoxTest", "RemoteRef": "HEAD", "RemoteSha": "adb01716715d1990cf5d458438bee63d762ae4dd", "_user": "laylaparast", "_type": "src", "_file": "SurrogateParadoxTest_2.2.tar.gz", "_fileid": "https://r2.ropensci.org/efe4809d4e0c0c35f94ad0fb446a5a271fb619bed76cfd348c57201bf2946958", "_filesize": 199260, "_sha256": "efe4809d4e0c0c35f94ad0fb446a5a271fb619bed76cfd348c57201bf2946958", "_expires": "2027-01-18T08:52:08.000Z", "_created": "2026-10-10T08:26:02.000Z", "_published": "2026-10-10T08:52:10.134Z", "_buildurl": "https://github.com/r-universe/laylaparast/actions/runs/38037713023", "_status": "success", "_host": "GitHub-Actions", "_jobs": [ { "job": 114172045882, "time": 115, "config": "linux-devel-arm64", "r": "4.7.0", "check": "OK", "artifact": "11665195397" }, { "job": 114172045834, "time": 139, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "11664228731" }, { "job": 114172045904, "time": 110, "config": "linux-release-arm64", "r": "4.6.1", "check": "OK", "artifact": "11664680893" }, { "job": 114172045821, "time": 134, "config": "linux-release-x86_64", "r": "4.6.1", "check": "OK", "artifact": "11665250296" }, { "job": 114172045861, "time": 99, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "OK", "artifact": "11665032666" }, { "job": 114172045942, "time": 252, "config": "macos-oldrel-x86_64", "r": "4.5.3", "check": "OK", "artifact": "11665037858" }, { "job": 114172045879, "time": 105, "config": "macos-release-arm64", "r": "4.6.1", "check": "OK", "artifact": "11664717974" }, { "job": 114172045828, "time": 260, "config": "macos-release-x86_64", "r": "4.6.1", "check": "OK", "artifact": "11665102564" }, { "job": 114171594336, "time": 157, "config": "source", "r": "4.6.1", "check": "OK", "artifact": "11664655728" }, { "job": 114172045843, "time": 105, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "11665165374" }, { "job": 114172045849, "time": 377, "config": "windows-devel-arm64", "r": "4.7.0", "check": "OK", "artifact": "11663959011" }, { "job": 114172045932, "time": 185, "config": "windows-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "11664083836" }, { "job": 114172045865, "time": 125, "config": "windows-oldrel-x86_64", "r": "4.5.3", "check": "OK", "artifact": "11664835687" }, { "job": 114172045894, "time": 360, "config": "windows-release-arm64", "r": "4.6.1", "check": "OK", "artifact": "11664368854" }, { "job": 114172045837, "time": 105, "config": "windows-release-x86_64", "r": "4.6.1", "check": "OK", "artifact": "11665190356" } ], "_upstream": "https://github.com/cran/SurrogateParadoxTest", "_commit": { "id": "adb01716715d1990cf5d458438bee63d762ae4dd", "author": "Layla Parast ", "committer": "cran-robot ", "message": "version 2.2\n", "time": 1776013227 }, "_maintainer": { "name": "Layla Parast", "email": "parast@austin.utexas.edu", "login": "laylaparast", "description": "", "uuid": 17624391 }, "_distro": "resolute", "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 3.5.0", "role": "Depends" }, { "package": "Rcpp", "role": "LinkingTo" }, { "package": "RcppArmadillo", "role": "LinkingTo" }, { "package": "stats", "role": "Imports" }, { "package": "MonotonicityTest", "role": "Imports" }, { "package": "MASS", "role": "Imports" }, { "package": "ggplot2", "role": "Imports" }, { "package": "Rcpp", "role": "Imports" }, { "package": "splines", "role": "Imports" }, { "package": "parallel", "role": "Imports" }, { "package": "numDeriv", "role": "Imports" }, { "package": "Matrix", "role": "Imports" } ], "_owner": "cran", "_selfowned": true, "_usedby": 0, "_updates": [ { "week": "2026-15", "n": 1 } ], "_tags": [ { "name": "2.2", "date": "2026-04-12" } ], "_stars": 0, "_contributors": [ { "user": "laylaparast", "count": 1, "uuid": 17624391 } ], "_userbio": { "uuid": 17624391, "type": "user", "name": "laylaparast", "followers": 6 }, "_downloads": { "count": 318, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/SurrogateParadoxTest" }, "_searchresults": 3, "_topics": [ "openblas", "cpp" ], "_rbuild": "4.6.1", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/manual.pdf", "extra/SurrogateParadoxTest.html" ], "_realowner": "laylaparast", "_cranurl": false, "_releases": [ { "version": "1.0", "date": "2024-12-08" }, { "version": "2.0", "date": "2025-01-20" }, { "version": "2.2", "date": "2026-04-12" } ], "_exports": [ "fourier_interval", "fourier_resilience_set", "gaussian_process_interval", "gp_resilience_set", "meta_analytic_resilience", "polynomial_interval", "polynomial_resilience_set", "test_assumptions" ], "_datasets": [ { "name": "dataA", "title": "Example dataset for meta-analytic analysis", "object": "dataA", "file": "dataA.RData", "class": [ "data.frame" ], "fields": [ "S", "Y", "G", "study" ], "rows": 500, "table": true, "tojson": true }, { "name": "dataB", "title": "Example dataset for meta-analytic analysis, new study", "object": "dataB", "file": "dataB.RData", "class": [ "list" ], "fields": [], "table": true, "tojson": true } ], "_help": [ { "page": "bootstrap_run_procedure_parallel", "title": "Meta-Analytic Resilience Probability using Bootstrap", "topics": [ "bootstrap_run_procedure_parallel" ] }, { "page": "calculate_p_hat", "title": "Calculate resilience probability.", "topics": [ "calculate_p_hat" ] }, { "page": "dataA", "title": "Example dataset for meta-analytic analysis", "topics": [ "dataA" ] }, { "page": "dataB", "title": "Example dataset for meta-analytic analysis, new study", "topics": [ "dataB" ] }, { "page": "fourier_interval", "title": "Fourier Resilience Interval", "topics": [ "fourier_interval" ] }, { "page": "fourier_resilience_set", "title": "Fourier Resilience Set", "topics": [ "fourier_resilience_set" ] }, { "page": "gaussian_process_interval", "title": "Gaussian Process Resilience Interval", "topics": [ "gaussian_process_interval" ] }, { "page": "gp_resilience_set", "title": "Gaussian Process Resilience Set", "topics": [ "gp_resilience_set" ] }, { "page": "make_basis", "title": "Basis", "topics": [ "make_basis" ] }, { "page": "meta_analytic_resilience", "title": "Meta-Analytic Resilience Probability", "topics": [ "meta_analytic_resilience" ] }, { "page": "polynomial_interval", "title": "Polynomial Resilience Interval", "topics": [ "polynomial_interval" ] }, { "page": "polynomial_resilience_set", "title": "Polynomial Resilience Set", "topics": [ "polynomial_resilience_set" ] }, { "page": "run_procedure_pab", "title": "Meta-Analytic Resilience Probability using PAB", "topics": [ "run_procedure_pab" ] }, { "page": "test_assumptions", "title": "Test assumptions to prevent surrogate paradox", "topics": [ "test_assumptions" ] } ], "_rundeps": [ "cli", "cpp11", "farver", "ggplot2", "glue", "gtable", "isoband", "labeling", "lattice", "lifecycle", "MASS", "Matrix", "MonotonicityTest", "numDeriv", "R6", "RColorBrewer", "Rcpp", "RcppArmadillo", "RcppEigen", "rlang", "S7", "scales", "vctrs", "viridisLite", "withr" ], "_sysdeps": [ { "shlib": "liblapack", "package": "libopenblas0-pthread", "source": "openblas", "version": "0.3.32+ds-5", "name": "openblas", "homepage": "https://www.openblas.net/", "description": "Optimized BLAS (linear algebra) library (shared lib, pthread)" }, { "shlib": "libblas", "package": "libopenblas0-pthread", "source": "openblas", "version": "0.3.32+ds-5", "name": "openblas", "homepage": "https://www.openblas.net/", "description": "Optimized BLAS (linear algebra) library (shared lib, pthread)" }, { "shlib": "libstdc++", "package": "libstdc++6", "source": "gcc", "version": "16-20260322-1ubuntu1", "name": "c++", "homepage": "http://gcc.gnu.org/", "description": "GNU Standard C++ Library v3" } ], "_score": 1, "_indexed": true, "_nocasepkg": "surrogateparadoxtest", "_universes": [ "laylaparast" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "2.2", "date": "2026-10-10T08:27:49.000Z", "distro": "resolute", "arch": "aarch64", "commit": "adb01716715d1990cf5d458438bee63d762ae4dd", "fileid": "https://r2.ropensci.org/1e4c578ce98877f1389765179ff08f1bf0004a83ea90cff3e4673ed106f37a8d", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/laylaparast/actions/runs/38037713023" }, { "r": "4.7.0", "os": "linux", "version": "2.2", "date": "2026-10-10T08:28:01.000Z", "distro": "resolute", "arch": "x86_64", "commit": "adb01716715d1990cf5d458438bee63d762ae4dd", "fileid": "https://r2.ropensci.org/d282e3ac452723f1632275a3979d9907234daff2fb82d9fec1d8d4e6b20b75e1", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/laylaparast/actions/runs/38037713023" }, { "r": "4.6.1", "os": "linux", "version": "2.2", "date": "2026-10-10T08:27:51.000Z", "distro": "resolute", "arch": "aarch64", "commit": "adb01716715d1990cf5d458438bee63d762ae4dd", "fileid": "https://r2.ropensci.org/c964aa7b62322e47736cf8df3ee0f2c89477a19881ed1e98d3c7af4f38baad93", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/laylaparast/actions/runs/38037713023" }, { "r": "4.6.1", "os": "linux", "version": "2.2", "date": "2026-10-10T08:27:58.000Z", "distro": "resolute", "arch": "x86_64", "commit": "adb01716715d1990cf5d458438bee63d762ae4dd", "fileid": "https://r2.ropensci.org/4715261256838d1840ad10cff913b4a4dea794086ee245e81e0294d12442d338", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/laylaparast/actions/runs/38037713023" }, { "r": "4.5.3", "os": "mac", "version": "2.2", "date": "2026-10-10T08:48:14.000Z", "arch": "aarch64", "commit": "adb01716715d1990cf5d458438bee63d762ae4dd", "fileid": "https://r2.ropensci.org/7284a8851e767ebc7347cef95b5ca64eb0d68f3c787a779d3aafa72959e4c6f0", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/laylaparast/actions/runs/38037713023" }, { "r": "4.5.3", "os": "mac", "version": "2.2", "date": "2026-10-10T08:50:21.000Z", "arch": "x86_64", "commit": "adb01716715d1990cf5d458438bee63d762ae4dd", "fileid": "https://r2.ropensci.org/b619e766ca94a0a7c97c16e41f4a63d02eae0fc583fa63518ea375b077e51d7c", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/laylaparast/actions/runs/38037713023" }, { "r": "4.6.1", "os": "mac", "version": "2.2", "date": "2026-10-10T08:48:15.000Z", "arch": "aarch64", "commit": "adb01716715d1990cf5d458438bee63d762ae4dd", "fileid": "https://r2.ropensci.org/d7d74d2ef57e773f92702fe70c8d6a118b02c1281dfb7796ff34b8a1c30e1fc0", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/laylaparast/actions/runs/38037713023" }, { "r": "4.6.1", "os": "mac", "version": "2.2", "date": "2026-10-10T08:48:47.000Z", "arch": "x86_64", "commit": "adb01716715d1990cf5d458438bee63d762ae4dd", "fileid": "https://r2.ropensci.org/9732e0fd1d42f33e10a0e6ded9788e7b913c2184db940251d5d6084732c5ef86", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/laylaparast/actions/runs/38037713023" }, { "r": "4.6.0", "os": "wasm", "version": "2.2", "date": "2026-10-10T08:28:11.000Z", "arch": "emscripten", "commit": "adb01716715d1990cf5d458438bee63d762ae4dd", "fileid": "https://r2.ropensci.org/6221775ebfd471e30b28e5a9dd85f9e9a29e9f6c8c080b6e62175175eca11587", "status": "success", "buildurl": "https://github.com/r-universe/laylaparast/actions/runs/38037713023" }, { "r": "4.7.0", "os": "win", "version": "2.2", "date": "2026-10-10T08:31:30.000Z", "arch": "aarch64", "commit": "adb01716715d1990cf5d458438bee63d762ae4dd", "fileid": "https://r2.ropensci.org/b90b7ea6d32441b1e27e532bf1b34ae1637f60ee89dc615226837925ae9521f1", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/laylaparast/actions/runs/38037713023" }, { "r": "4.7.0", "os": "win", "version": "2.2", "date": "2026-10-10T08:27:47.000Z", "arch": "x86_64", "commit": "adb01716715d1990cf5d458438bee63d762ae4dd", "fileid": "https://r2.ropensci.org/4c18c010512ef47e8edc1a5d4b1050c48a88bc35ac588812f1919f7b0aa0b233", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/laylaparast/actions/runs/38037713023" }, { "r": "4.5.3", "os": "win", "version": "2.2", "date": "2026-10-10T08:27:27.000Z", "arch": "x86_64", "commit": "adb01716715d1990cf5d458438bee63d762ae4dd", "fileid": "https://r2.ropensci.org/899aaa88cee41b300251dc5e737b06d48bb37531cc0c6131497db2d59fd7f2bf", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/laylaparast/actions/runs/38037713023" }, { "r": "4.6.1", "os": "win", "version": "2.2", "date": "2026-10-10T08:30:56.000Z", "arch": "aarch64", "commit": "adb01716715d1990cf5d458438bee63d762ae4dd", "fileid": "https://r2.ropensci.org/73b70e75616235337608d0265fd14fc2215ae2afda03d2a1d438d64dc4427d64", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/laylaparast/actions/runs/38037713023" }, { "r": "4.6.1", "os": "win", "version": "2.2", "date": "2026-10-10T08:27:22.000Z", "arch": "x86_64", "commit": "adb01716715d1990cf5d458438bee63d762ae4dd", "fileid": "https://r2.ropensci.org/44b96f20a766f8f11ffb1870b4329370b263a2b0384d9b5a7d48b6b6e94a843c", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/laylaparast/actions/runs/38037713023" } ] }