{
  "_id": "6a4924ceb5e98c4082a0b73b",
  "Package": "CMFsurrogate",
  "Type": "Package",
  "Title": "Calibrated Model Fusion Approach to Combine Surrogate Markers",
  "Version": "1.1",
  "Date": "2026-01-25",
  "Authors@R": "c(person(\"Xuan\", \"Wang\", role = \"aut\"),\nperson(\"Layla\", \"Parast\", role = \"cre\", email = \"parast@austin.utexas.edu\"))",
  "Description": "Uses a calibrated model fusion approach to optimally\ncombine multiple surrogate markers. Specifically, two initial\nestimates of optimal composite scores of the markers are\nobtained; the optimal calibrated combination of the two\nestimated scores is then constructed which ensures both\nvalidity of the final combined score and optimality with\nrespect to the proportion of treatment effect explained (PTE)\nby the final combined score. The primary function,\npte.estimate.multiple(), estimates the PTE of the identified\ncombination of multiple surrogate markers. Details are\ndescribed in Wang et al (2022) <doi:10.1111/biom.13677>. A\ntutorial for the package is available at\n<https://www.laylaparast.com/cmfsurrogate> and a Shiny App is\navailable at <https://parastlab.shinyapps.io/CMFsurrogateApp/>.",
  "License": "GPL",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-07-04 15:17:31 UTC",
    "User": "root"
  },
  "Author": "Xuan Wang [aut], Layla Parast [cre]",
  "Maintainer": "Layla Parast <parast@austin.utexas.edu>",
  "Repository": "https://laylaparast.r-universe.dev",
  "Date/Publication": "2026-01-25 18:30:02 UTC",
  "RemoteUrl": "https://github.com/cran/CMFsurrogate",
  "RemoteRef": "HEAD",
  "RemoteSha": "9d9ea67afc2b5a02423dfed8f83d29ae5443c5eb",
  "_user": "laylaparast",
  "_type": "src",
  "_file": "CMFsurrogate_1.1.tar.gz",
  "_fileid": "https://r2.ropensci.org/ed3dfe356a772600aaa793e9984e72def4e04120418e8f0318ef9fbdffa5208d",
  "_filesize": 103557,
  "_sha256": "ed3dfe356a772600aaa793e9984e72def4e04120418e8f0318ef9fbdffa5208d",
  "_expires": "2026-10-12T15:20:44.000Z",
  "_created": "2026-07-04T15:17:31.000Z",
  "_published": "2026-07-04T15:20:46.062Z",
  "_jobs": [
    {
      "job": 85143272049,
      "time": 108,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "8082901392"
    },
    {
      "job": 85143272046,
      "time": 97,
      "config": "linux-release-x86_64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "8082900097"
    },
    {
      "job": 85143272050,
      "time": 66,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "8082907510"
    },
    {
      "job": 85143272048,
      "time": 63,
      "config": "macos-release-arm64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "8082903028"
    },
    {
      "job": 85143107743,
      "time": 148,
      "config": "source",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "8082889394"
    },
    {
      "job": 85143272054,
      "time": 89,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "8082899360"
    },
    {
      "job": 85143272056,
      "time": 66,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "8082896706"
    },
    {
      "job": 85143272061,
      "time": 75,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "8082897709"
    },
    {
      "job": 85143272057,
      "time": 63,
      "config": "windows-release",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "8082896393"
    }
  ],
  "_host": "GitHub-Actions",
  "_buildurl": "https://github.com/r-universe/laylaparast/actions/runs/28710479795",
  "_status": "success",
  "_upstream": "https://github.com/cran/CMFsurrogate",
  "_commit": {
    "id": "9d9ea67afc2b5a02423dfed8f83d29ae5443c5eb",
    "author": "Layla Parast <parast@austin.utexas.edu>",
    "committer": "cran-robot <csardi.gabor+cran@gmail.com>",
    "message": "version 1.1\n",
    "time": 1769365802
  },
  "_maintainer": {
    "name": "Layla Parast",
    "email": "parast@austin.utexas.edu",
    "login": "laylaparast",
    "description": "",
    "uuid": 17624391
  },
  "_distro": "resolute",
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 3.5.0",
      "role": "Depends"
    },
    {
      "package": "splines",
      "role": "Imports"
    },
    {
      "package": "MASS",
      "role": "Imports"
    },
    {
      "package": "stats",
      "role": "Imports"
    },
    {
      "package": "utils",
      "role": "Imports"
    }
  ],
  "_owner": "cran",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [
    {
      "week": "2026-04",
      "n": 1
    }
  ],
  "_tags": [
    {
      "name": "1.1",
      "date": "2026-01-25"
    }
  ],
  "_stars": 0,
  "_contributors": [
    {
      "user": "laylaparast",
      "count": 2,
      "uuid": 17624391
    }
  ],
  "_userbio": {
    "uuid": 17624391,
    "type": "user",
    "name": "laylaparast",
    "followers": 6
  },
  "_downloads": {
    "count": 266,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/CMFsurrogate"
  },
  "_searchresults": 0,
  "_rbuild": "4.6.1",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/CMFsurrogate.html",
    "extra/contents.json",
    "manual.pdf"
  ],
  "_realowner": "laylaparast",
  "_cranurl": false,
  "_releases": [
    {
      "version": "1.0",
      "date": "2022-09-23"
    },
    {
      "version": "1.1",
      "date": "2026-01-25"
    }
  ],
  "_exports": [
    "gen.bootstrap.weights",
    "pte.estimate.multiple",
    "resam"
  ],
  "_datasets": [
    {
      "name": "example.data",
      "title": "Example data",
      "object": "example.data",
      "file": "example.data.RData",
      "class": [
        "list"
      ],
      "fields": [],
      "table": false,
      "tojson": true
    }
  ],
  "_help": [
    {
      "page": "example.data",
      "title": "Example data",
      "topics": [
        "example.data"
      ]
    },
    {
      "page": "gen.bootstrap.weights",
      "title": "Generate bootstrap sample",
      "topics": [
        "gen.bootstrap.weights"
      ]
    },
    {
      "page": "pte.estimate.multiple",
      "title": "Estimates the proportion of treatment effect explained by the optimal combination of multiple surrogate markers using a calibrated model fusion approach",
      "topics": [
        "pte.estimate.multiple"
      ]
    },
    {
      "page": "resam",
      "title": "Estimates quantities using resampled data",
      "topics": [
        "resam"
      ]
    }
  ],
  "_rundeps": [
    "MASS"
  ],
  "_score": 1,
  "_indexed": true,
  "_nocasepkg": "cmfsurrogate",
  "_universes": [
    "laylaparast"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.1",
      "date": "2026-07-04T15:19:21.000Z",
      "distro": "resolute",
      "commit": "9d9ea67afc2b5a02423dfed8f83d29ae5443c5eb",
      "fileid": "https://r2.ropensci.org/7130c9dc63d67c4b563c8d6f9821039b6fcfbfa3a8cbc4a7e5013e02474c30bc",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/laylaparast/actions/runs/28710479795"
    },
    {
      "r": "4.6.1",
      "os": "linux",
      "version": "1.1",
      "date": "2026-07-04T15:19:10.000Z",
      "distro": "resolute",
      "commit": "9d9ea67afc2b5a02423dfed8f83d29ae5443c5eb",
      "fileid": "https://r2.ropensci.org/08388525347b899662f54e3318fe220f944d26d9e0614a81e4b2276bb416a769",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/laylaparast/actions/runs/28710479795"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "1.1",
      "date": "2026-07-04T15:20:22.000Z",
      "commit": "9d9ea67afc2b5a02423dfed8f83d29ae5443c5eb",
      "fileid": "https://r2.ropensci.org/319874aa423ae98e5e2c586186c66569e4a91efd21950e326d428f695212a328",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/laylaparast/actions/runs/28710479795"
    },
    {
      "r": "4.6.1",
      "os": "mac",
      "version": "1.1",
      "date": "2026-07-04T15:19:39.000Z",
      "commit": "9d9ea67afc2b5a02423dfed8f83d29ae5443c5eb",
      "fileid": "https://r2.ropensci.org/906d4d55312ec43ad05d297e414eedef5a64be1d4485cf3a0134e919509f55e2",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/laylaparast/actions/runs/28710479795"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "1.1",
      "date": "2026-07-04T15:19:13.000Z",
      "commit": "9d9ea67afc2b5a02423dfed8f83d29ae5443c5eb",
      "fileid": "https://r2.ropensci.org/3370df2db63e0981919dedca28ef534f9ac792108336e198c1cd9157a96d3341",
      "status": "success",
      "buildurl": "https://github.com/r-universe/laylaparast/actions/runs/28710479795"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "1.1",
      "date": "2026-07-04T15:18:35.000Z",
      "commit": "9d9ea67afc2b5a02423dfed8f83d29ae5443c5eb",
      "fileid": "https://r2.ropensci.org/53be931012dff6b2e6a8a7231dcd140ed10a6dff7d886b39d32dca9f35b9ec31",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/laylaparast/actions/runs/28710479795"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "1.1",
      "date": "2026-07-04T15:18:44.000Z",
      "commit": "9d9ea67afc2b5a02423dfed8f83d29ae5443c5eb",
      "fileid": "https://r2.ropensci.org/5c2dc5e15152fff5d318cb13decee4d8298a648523647e45b5be466bac3343a3",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/laylaparast/actions/runs/28710479795"
    },
    {
      "r": "4.6.1",
      "os": "win",
      "version": "1.1",
      "date": "2026-07-04T15:18:32.000Z",
      "commit": "9d9ea67afc2b5a02423dfed8f83d29ae5443c5eb",
      "fileid": "https://r2.ropensci.org/df960d7d603768c3a644daf844a5bd5ec24f3674f14fb4e3679578d5edbe28cd",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/laylaparast/actions/runs/28710479795"
    }
  ]
}